PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P02380_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32051.1 Da PI: 7.8827

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P02380_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	125	179	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k GSMUA_Achr7P02380_001 125 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 179 678899***********************************************98 PP
2	HD-ZIP_I/II	127.3	6.6e-41	125	215	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr GSMUA_Achr7P02380_001 125 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCQTLTEENRRLQKEVAELR 212 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +lk GSMUA_Achr7P02380_001 213 -ALK 215 .555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-18	120	182	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	121	181	IPR001356	Homeobox domain
SMART	SM00389	3.0E-15	123	185	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-17	125	179	IPR009057	Homeodomain-like
Pfam	PF00046	6.4E-16	125	179	IPR001356	Homeobox domain
CDD	cd00086	6.15E-15	125	182	No hit	No description
PROSITE pattern	PS00027	0	156	179	IPR017970	Homeobox, conserved site
SMART	SM00340	2.1E-25	181	224	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.0E-10	181	215	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRLVVGRGGK DEDEERRVEE EEEETEEGRG LAEAPLQLSL LPLLPVPPQQ PSSPQLRLPW 60 TTETSKNPDE KNLDASMRGF DMNHAPSAVA ADEAASSSSS PKREATTVEI GSLRVSDEEE 120 NGLGRKKLRL TKEQSAFLEE SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL 180 KQTEVDCEYL RRCCQTLTEE NRRLQKEVAE LRALKTSRPF YMHVPATTLS MCPACERVAS 240 TTTIPTAPAT PSADHRPNSF AALFSKPVAL QSGSRTAPSA PRLPSPAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	181	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408401.1	1e-140	PREDICTED: homeobox-leucine zipper protein HOX11-like
Swissprot	A2YW03	3e-83	HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
Swissprot	Q6YPD0	2e-83	HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBL	M0TE28	0.0	M0TE28_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P02380_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5209	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-59	homeobox from Arabidopsis thaliana